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GNNEvaluator: Evaluating GNN Performance On Unseen Graphs Without Labels

Neural Information Processing Systems

Evaluating the performance of graph neural networks (GNNs) is an essential task for practical GNN model deployment and serving, as deployed GNNs face significant performance uncertainty when inferring on unseen and unlabeled test graphs, due to mismatched training-test graph distributions.


Learning Generalizable Device Placement Algorithms for Distributed Machine Learning

Neural Information Processing Systems

We present Placeto, a reinforcement learning (RL) approach to efficiently find device placements for distributed neural network training. Unlike prior approaches that only find a device placement for a specific computation graph, Placeto can learn generalizable device placement policies that can be applied to any graph. We propose two key ideas in our approach: (1) we represent the policy as performing iterative placement improvements, rather than outputting a placement in one shot; (2) we use graph embeddings to capture relevant information about the structure of the computation graph, without relying on node labels for indexing. These ideas allow Placeto to train efficiently and generalize to unseen graphs. Our experiments show that Placeto requires up to 6.1x fewer training steps to find placements that are on par with or better than the best placements found by prior approaches. Moreover, Placeto is able to learn a generalizable placement policy for any given family of graphs that can be used without any re-training to predict optimized placements for unseen graphs from the same family. This eliminates the huge overhead incurred by the prior RL approaches whose lack of generalizability necessitates re-training from scratch every time a new graph is to be placed.


A Systematic Study of Model Extraction Attacks on Graph Foundation Models

Xu, Haoyan, Qian, Ruizhi, Li, Jiate, Dong, Yushun, Lin, Minghao, Yan, Hanson, Yao, Zhengtao, Liu, Qinghua, Dong, Junhao, Huang, Ruopeng, Zhao, Yue, Li, Mengyuan

arXiv.org Artificial Intelligence

Graph machine learning has advanced rapidly in tasks such as link prediction, anomaly detection, and node classification. As models scale up, pretrained graph models have become valuable intellectual assets because they encode extensive computation and domain expertise. Building on these advances, Graph Foundation Models (GFMs) mark a major step forward by jointly pretraining graph and text encoders on massive and diverse data. This unifies structural and semantic understanding, enables zero-shot inference, and supports applications such as fraud detection and biomedical analysis. However, the high pretraining cost and broad cross-domain knowledge in GFMs also make them attractive targets for model extraction attacks (MEAs). Prior work has focused only on small graph neural networks trained on a single graph, leaving the security implications for large-scale and multimodal GFMs largely unexplored. This paper presents the first systematic study of MEAs against GFMs. We formalize a black-box threat model and define six practical attack scenarios covering domain-level and graph-specific extraction goals, architectural mismatch, limited query budgets, partial node access, and training data discrepancies. To instantiate these attacks, we introduce a lightweight extraction method that trains an attacker encoder using supervised regression of graph embeddings. Even without contrastive pretraining data, this method learns an encoder that stays aligned with the victim text encoder and preserves its zero-shot inference ability on unseen graphs. Experiments on seven datasets show that the attacker can approximate the victim model using only a tiny fraction of its original training cost, with almost no loss in accuracy. These findings reveal that GFMs greatly expand the MEA surface and highlight the need for deployment-aware security defenses in large-scale graph learning systems.



GNNEvaluator: Evaluating GNN Performance On Unseen Graphs Without Labels

Neural Information Processing Systems

Evaluating the performance of graph neural networks (GNNs) is an essential task for practical GNN model deployment and serving, as deployed GNNs face significant performance uncertainty when inferring on unseen and unlabeled test graphs, due to mismatched training-test graph distributions. In this paper, we study a new problem, GNN model evaluation, that aims to assess the performance of a specific GNN model trained on labeled and observed graphs, by precisely estimating its performance (e.g., node classification accuracy) on unseen graphs without labels. Concretely, we propose a two-stage GNN model evaluation framework, including (1) DiscGraph set construction and (2) GNNEvaluator training and inference. The DiscGraph set captures wide-range and diverse graph data distribution discrepancies through a discrepancy measurement function, which exploits the GNN outputs of latent node embeddings and node class predictions. Under the effective training supervision from the DiscGraph set, GNNEvaluator learns to precisely estimate node classification accuracy of the to-be-evaluated GNN model and makes an accurate inference for evaluating GNN model performance.


Rethinking Reconstruction-based Graph-Level Anomaly Detection: Limitations and a Simple Remedy

Kim, Sunwoo, Lee, Soo Yong, Bu, Fanchen, Kang, Shinhwan, Kim, Kyungho, Yoo, Jaemin, Shin, Kijung

arXiv.org Artificial Intelligence

Graph autoencoders (Graph-AEs) learn representations of given graphs by aiming to accurately reconstruct them. A notable application of Graph-AEs is graph-level anomaly detection (GLAD), whose objective is to identify graphs with anomalous topological structures and/or node features compared to the majority of the graph population. Graph-AEs for GLAD regard a graph with a high mean reconstruction error (i.e. mean of errors from all node pairs and/or nodes) as anomalies. Namely, the methods rest on the assumption that they would better reconstruct graphs with similar characteristics to the majority. We, however, report non-trivial counter-examples, a phenomenon we call reconstruction flip, and highlight the limitations of the existing Graph-AE-based GLAD methods. Specifically, we empirically and theoretically investigate when this assumption holds and when it fails. Through our analyses, we further argue that, while the reconstruction errors for a given graph are effective features for GLAD, leveraging the multifaceted summaries of the reconstruction errors, beyond just mean, can further strengthen the features. Thus, we propose a novel and simple GLAD method, named MUSE. The key innovation of MUSE involves taking multifaceted summaries of reconstruction errors as graph features for GLAD. This surprisingly simple method obtains SOTA performance in GLAD, performing best overall among 14 methods across 10 datasets.


Learning Generalizable Device Placement Algorithms for Distributed Machine Learning

Neural Information Processing Systems

We present Placeto, a reinforcement learning (RL) approach to efficiently find device placements for distributed neural network training. Unlike prior approaches that only find a device placement for a specific computation graph, Placeto can learn generalizable device placement policies that can be applied to any graph. We propose two key ideas in our approach: (1) we represent the policy as performing iterative placement improvements, rather than outputting a placement in one shot; (2) we use graph embeddings to capture relevant information about the structure of the computation graph, without relying on node labels for indexing. These ideas allow Placeto to train efficiently and generalize to unseen graphs. Our experiments show that Placeto requires up to 6.1x fewer training steps to find placements that are on par with or better than the best placements found by prior approaches.


GNNEvaluator: Evaluating GNN Performance On Unseen Graphs Without Labels

Zheng, Xin, Zhang, Miao, Chen, Chunyang, Molaei, Soheila, Zhou, Chuan, Pan, Shirui

arXiv.org Artificial Intelligence

Evaluating the performance of graph neural networks (GNNs) is an essential task for practical GNN model deployment and serving, as deployed GNNs face significant performance uncertainty when inferring on unseen and unlabeled test graphs, due to mismatched training-test graph distributions. In this paper, we study a new problem, GNN model evaluation, that aims to assess the performance of a specific GNN model trained on labeled and observed graphs, by precisely estimating its performance (e.g., node classification accuracy) on unseen graphs without labels. Concretely, we propose a two-stage GNN model evaluation framework, including (1) DiscGraph set construction and (2) GNNEvaluator training and inference. The DiscGraph set captures wide-range and diverse graph data distribution discrepancies through a discrepancy measurement function, which exploits the outputs of GNNs related to latent node embeddings and node class predictions. Under the effective training supervision from the DiscGraph set, GNNEvaluator learns to precisely estimate node classification accuracy of the to-be-evaluated GNN model and makes an accurate inference for evaluating GNN model performance. Extensive experiments on real-world unseen and unlabeled test graphs demonstrate the effectiveness of our proposed method for GNN model evaluation.


Learning Generalizable Device Placement Algorithms for Distributed Machine Learning

addanki, ravichandra, Venkatakrishnan, Shaileshh Bojja, Gupta, Shreyan, Mao, Hongzi, Alizadeh, Mohammad

Neural Information Processing Systems

We present Placeto, a reinforcement learning (RL) approach to efficiently find device placements for distributed neural network training. Unlike prior approaches that only find a device placement for a specific computation graph, Placeto can learn generalizable device placement policies that can be applied to any graph. We propose two key ideas in our approach: (1) we represent the policy as performing iterative placement improvements, rather than outputting a placement in one shot; (2) we use graph embeddings to capture relevant information about the structure of the computation graph, without relying on node labels for indexing. These ideas allow Placeto to train efficiently and generalize to unseen graphs. Our experiments show that Placeto requires up to 6.1x fewer training steps to find placements that are on par with or better than the best placements found by prior approaches.